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  5. Zm00001d039401_T001

Zm00001d039401_T001


Description : CTC-interacting domain 9


Gene families : OG_01_0007509 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007509_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039401_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039401_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_225
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_229


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom SMART 212 283
IPR000504 RRM_dom SMART 115 185
IPR000504 RRM_dom Pfam 213 276
IPR000504 RRM_dom Pfam 116 178
IPR000504 RRM_dom ProSiteProfiles 114 189
IPR009818 Ataxin-2_C Pfam 31 44
IPR034825 CID8-like_RRM2 CDD 207 288
IPR035979 RBD_domain_sf SUPERFAMILY 102 191
IPR034823 CID8-like_RRM1 CDD 112 191
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 83 190
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 196 295
IPR000504 RRM_dom ProSiteProfiles 211 287
IPR035979 RBD_domain_sf SUPERFAMILY 203 294
IPR034823 CID8-like_RRM1 CDD 112 191
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 83 190
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 196 295
IPR000504 RRM_dom SMART 212 283
IPR000504 RRM_dom SMART 115 185
IPR000504 RRM_dom Pfam 213 276
IPR000504 RRM_dom Pfam 116 178
IPR009818 Ataxin-2_C Pfam 31 44
IPR000504 RRM_dom ProSiteProfiles 114 189
IPR035979 RBD_domain_sf SUPERFAMILY 102 191
IPR035979 RBD_domain_sf SUPERFAMILY 203 294
IPR000504 RRM_dom ProSiteProfiles 211 287

No CAZYmes available for this sequence

No external refs found!