Zm00001d039816_T002

Description : tRNA synthetase class II (D, K and N) family protein

Gene families : OG_01_0007171 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007171_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039816_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039816_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	ISM	GOs from InterProScan
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	39	477
IPR029351	GAD_dom	Pfam	230	329
IPR004364	Aa-tRNA-synt_II	Pfam	39	478
IPR004524	Asp-tRNA-ligase_1	NCBIfam	1	500
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	35	499
IPR047090	AspRS_core	CDD	59	478
IPR004524	Asp-tRNA-ligase_1	Hamap	1	504
IPR004115	GAD-like_sf	Gene3D	194	343
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	112	124
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	129	142
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	394	410
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	438	452
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	59	475
IPR004115	GAD-like_sf	SUPERFAMILY	211	343
IPR004115	GAD-like_sf	Gene3D	194	343
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	35	499
IPR004364	Aa-tRNA-synt_II	Pfam	39	478
IPR004524	Asp-tRNA-ligase_1	PANTHER	1	501
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	112	124
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	129	142
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	394	410
IPR002312	Asp/Asn-tRNA-synth_IIb	PRINTS	438	452
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	59	475
IPR004524	Asp-tRNA-ligase_1	Hamap	1	504
IPR004524	Asp-tRNA-ligase_1	TIGRFAM	1	500
IPR029351	GAD_dom	Pfam	230	329
IPR004115	GAD-like_sf	SUPERFAMILY	211	343
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	39	477

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d039816_T002

Expression Profile

Co-expression Networks

Functional Annotation