Zm00001d039860_T003

Description : proteolysis 6

Gene families : OG_01_0004830 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004830_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039860_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039860_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	ISM	GOs from InterProScan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003126	Znf_UBR	Pfam	123	190
IPR039164	UBR1-like	PANTHER	797	2000
IPR044046	E3_ligase_UBR-like_C	Pfam	1936	1986
IPR044046	E3_ligase_UBR-like_C	Pfam	1532	1894
IPR042065	E3_ELL-like	Gene3D	821	913
IPR003126	Znf_UBR	SMART	122	191
IPR003126	Znf_UBR	ProSiteProfiles	122	192
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	825	910
IPR039164	UBR1-like	PANTHER	21	798
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	825	910
IPR003126	Znf_UBR	Pfam	124	190
IPR003126	Znf_UBR	ProSiteProfiles	122	192
IPR003126	Znf_UBR	SMART	122	191
IPR039164	UBR1-like	PANTHER	796	2004
IPR042065	E3_ELL-like	Gene3D	821	913
IPR044046	E3_ligase_UBR-like_C	Pfam	1531	1894
IPR044046	E3_ligase_UBR-like_C	Pfam	1936	1986

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d039860_T003

Expression Profile

Co-expression Networks

Functional Annotation