Zm00001d040123_T007

Description : SIN3-like 4

Gene families : OG_01_0003302 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003302_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040123_T007
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040123_T007
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003714	transcription corepressor activity	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036600	PAH_sf	Gene3D	144	217
IPR036600	PAH_sf	SUPERFAMILY	145	215
IPR036600	PAH_sf	Gene3D	72	134
IPR013194	HDAC_interact_dom	SMART	512	612
IPR036600	PAH_sf	SUPERFAMILY	356	422
IPR013194	HDAC_interact_dom	Pfam	514	606
IPR003822	PAH	ProSiteProfiles	146	216
IPR036600	PAH_sf	Gene3D	352	425
IPR003822	PAH	ProSiteProfiles	66	136
IPR036600	PAH_sf	SUPERFAMILY	64	135
IPR003822	PAH	ProSiteProfiles	355	423
IPR031693	Sin3_C	Pfam	1148	1396
IPR039774	Sin3-like	PANTHER	64	1404
IPR003822	PAH	Pfam	89	133
IPR003822	PAH	Pfam	169	213
IPR003822	PAH	Pfam	376	420
IPR039774	Sin3-like	PANTHER	6	1425
IPR036600	PAH_sf	SUPERFAMILY	64	135
IPR003822	PAH	ProSiteProfiles	355	423
IPR013194	HDAC_interact_dom	Pfam	514	606
IPR036600	PAH_sf	Gene3D	352	425
IPR031693	Sin3_C	Pfam	1148	1396
IPR036600	PAH_sf	Gene3D	144	217
IPR013194	HDAC_interact_dom	SMART	512	612
IPR003822	PAH	Pfam	89	133
IPR003822	PAH	Pfam	169	213
IPR003822	PAH	Pfam	376	420
IPR036600	PAH_sf	SUPERFAMILY	356	422
IPR003822	PAH	ProSiteProfiles	66	136
IPR003822	PAH	ProSiteProfiles	146	216
IPR036600	PAH_sf	Gene3D	72	134
IPR036600	PAH_sf	SUPERFAMILY	145	215

No CAZYmes available for this sequence

External Links

No external refs found!