Zm00001d040293_T001

Description : homologue of NAP57

Gene families : OG_01_0008373 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008373_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040293_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040293_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
MF	GO:0009982	pseudouridine synthase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002478	PUA	Pfam	308	381
IPR002501	PsdUridine_synth_N	Pfam	121	237
IPR015947	PUA-like_sf	SUPERFAMILY	307	388
IPR002478	PUA	SMART	308	382
IPR020103	PsdUridine_synth_cat_dom_sf	SUPERFAMILY	60	305
IPR012960	Dyskerin-like	SMART	59	117
IPR004521	Uncharacterised_CHP00451	NCBIfam	303	379
IPR012960	Dyskerin-like	Pfam	60	117
IPR004802	tRNA_PsdUridine_synth_B_fam	PANTHER	19	541
IPR032819	TruB_C	Pfam	238	304
IPR036974	PUA_sf	Gene3D	60	391
IPR004802	tRNA_PsdUridine_synth_B_fam	NCBIfam	67	392
IPR015947	PUA-like_sf	SUPERFAMILY	307	388
IPR032819	TruB_C	Pfam	238	304
IPR004802	tRNA_PsdUridine_synth_B_fam	PANTHER	1	578
IPR002478	PUA	SMART	308	382
IPR012960	Dyskerin-like	Pfam	60	117
IPR036974	PUA_sf	Gene3D	60	391
IPR020103	PsdUridine_synth_cat_dom_sf	SUPERFAMILY	60	305
IPR004521	Uncharacterised_CHP00451	TIGRFAM	303	379
IPR002478	PUA	Pfam	308	380
IPR012960	Dyskerin-like	SMART	59	117
IPR002501	PsdUridine_synth_N	Pfam	121	237
IPR004802	tRNA_PsdUridine_synth_B_fam	TIGRFAM	67	392

No CAZYmes available for this sequence

External Links

No external refs found!