Zm00001d040503_T002

Description : Coatomer, beta subunit

Gene families : OG_01_0002716 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002716_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040503_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040503_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_232

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	ISM	GOs from InterProScan
CC	GO:0030117	membrane coat	ISM	GOs from InterProScan
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016460	COPB1	PANTHER	1629	1724
IPR000477	RT_dom	Pfam	1479	1563
IPR016024	ARM-type_fold	SUPERFAMILY	20	640
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	954	1194
IPR005135	Endo/exonuclease/phosphatase	Pfam	955	1103
IPR002553	Clathrin/coatomer_adapt-like_N	Pfam	21	472
IPR029446	COPB1_appendage_platform_dom	Pfam	815	859
IPR029446	COPB1_appendage_platform_dom	Pfam	1630	1717
IPR011989	ARM-like	Gene3D	10	533
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	947	1193
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	1412	1562
IPR011710	Coatomer_bsu_C	Pfam	671	809
IPR011710	Coatomer_bsu_C	Pfam	671	809
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	954	1194
IPR002553	Clathrin/coatomer_adapt-like_N	Pfam	21	470
IPR011989	ARM-like	Gene3D	10	533
IPR000477	RT_dom	Pfam	1478	1563
IPR016024	ARM-type_fold	SUPERFAMILY	20	640
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	947	1193
IPR016460	COPB1	PANTHER	1629	1725
IPR029446	COPB1_appendage_platform_dom	Pfam	1630	1717
IPR029446	COPB1_appendage_platform_dom	Pfam	815	859
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	1412	1562
IPR016460	COPB1	PANTHER	1	857

No CAZYmes available for this sequence

External Links

No external refs found!