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  5. Zm00001d040589_T001

Zm00001d040589_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005121_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040589_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040589_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_525
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_121


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006626 PbH1 SMART 291 312
IPR006626 PbH1 SMART 241 290
IPR006626 PbH1 SMART 374 395
IPR006626 PbH1 SMART 345 366
IPR006626 PbH1 SMART 314 335
IPR000743 Glyco_hydro_28 Pfam 129 453
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 102 487
IPR012334 Pectin_lyas_fold Gene3D 88 482
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 102 487
IPR000743 Glyco_hydro_28 Pfam 129 453
IPR006626 PbH1 SMART 291 312
IPR006626 PbH1 SMART 241 290
IPR006626 PbH1 SMART 374 395
IPR006626 PbH1 SMART 345 366
IPR006626 PbH1 SMART 314 335
IPR012334 Pectin_lyas_fold Gene3D 88 482
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 500 5.8e-96 125 467
No external refs found!