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  5. Zm00001d040831_T021

Zm00001d040831_T021


Description : chromatin-remodeling protein 11


Gene families : OG_01_0003736 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003736_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040831_T021
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040831_T021
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006338 chromatin remodeling ISM GOs from InterProScan
MF GO:0031491 nucleosome binding ISM GOs from InterProScan
MF GO:0140658 ATP-dependent chromatin remodeler activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014001 Helicase_ATP-bd ProSiteProfiles 242 407
IPR001650 Helicase_C Pfam 532 645
IPR009057 Homeobox-like_sf SUPERFAMILY 880 930
IPR027417 P-loop_NTPase Gene3D 451 743
IPR001005 SANT/Myb SMART 978 1040
IPR001005 SANT/Myb SMART 877 926
IPR044754 Isw1/2_DEXHc CDD 227 447
IPR027417 P-loop_NTPase SUPERFAMILY 447 729
IPR015195 SLIDE Pfam 934 1044
IPR027417 P-loop_NTPase SUPERFAMILY 201 445
IPR036306 ISWI_HAND-dom_sf SUPERFAMILY 793 878
IPR017884 SANT_dom ProSiteProfiles 876 928
IPR001650 Helicase_C SMART 561 645
IPR038718 SNF2-like_sf Gene3D 231 446
IPR001650 Helicase_C ProSiteProfiles 535 686
IPR015194 ISWI_HAND-dom Pfam 794 858
IPR000330 SNF2_N Pfam 233 510
IPR009057 Homeobox-like_sf SUPERFAMILY 932 1054
IPR036306 ISWI_HAND-dom_sf Gene3D 782 876
IPR001005 SANT/Myb CDD 880 924
IPR014001 Helicase_ATP-bd SMART 226 418
IPR027417 P-loop_NTPase SUPERFAMILY 201 445
IPR009057 Homeobox-like_sf SUPERFAMILY 932 1054
IPR036306 ISWI_HAND-dom_sf Gene3D 782 876
IPR001650 Helicase_C SMART 561 645
IPR014001 Helicase_ATP-bd ProSiteProfiles 242 407
IPR017884 SANT_dom ProSiteProfiles 876 928
IPR027417 P-loop_NTPase Gene3D 451 743
IPR001650 Helicase_C Pfam 533 645
IPR001650 Helicase_C ProSiteProfiles 535 686
IPR027417 P-loop_NTPase SUPERFAMILY 447 729
IPR014001 Helicase_ATP-bd SMART 226 418
IPR038718 SNF2-like_sf Gene3D 231 446
IPR015194 ISWI_HAND-dom Pfam 794 855
IPR001005 SANT/Myb CDD 880 924
IPR009057 Homeobox-like_sf SUPERFAMILY 880 930
IPR000330 SNF2_N Pfam 243 510
IPR044754 Isw1/2_DEXHc CDD 227 447
IPR001005 SANT/Myb SMART 877 926
IPR001005 SANT/Myb SMART 978 1040
IPR036306 ISWI_HAND-dom_sf SUPERFAMILY 793 878
IPR015195 SLIDE Pfam 934 1044

No CAZYmes available for this sequence

No external refs found!