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  5. Zm00001d040960_T004

Zm00001d040960_T004


Description : Actin binding Calponin homology (CH) domain-containing protein


Gene families : OG_01_0000698 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000698_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d040960_T004 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d040960_T004
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_249


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0051015 actin filament binding ISM GOs from InterProScan
BP GO:0051017 actin filament bundle assembly ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001715 CH_dom ProSiteProfiles 155 272
IPR001715 CH_dom ProSiteProfiles 300 404
IPR001589 Actinin_actin-bd_CS ProSitePatterns 244 268
IPR036872 CH_dom_sf Gene3D 605 738
IPR036872 CH_dom_sf SUPERFAMILY 581 738
IPR001715 CH_dom ProSiteProfiles 426 532
IPR001715 CH_dom ProSiteProfiles 612 741
IPR039959 Fimbrin/Plastin PANTHER 3 741
IPR036872 CH_dom_sf Gene3D 422 535
IPR036872 CH_dom_sf Gene3D 151 277
IPR036872 CH_dom_sf SUPERFAMILY 153 521
IPR001715 CH_dom SMART 302 402
IPR001715 CH_dom SMART 428 527
IPR001715 CH_dom SMART 157 270
IPR001715 CH_dom SMART 614 739
IPR001715 CH_dom Pfam 301 403
IPR001715 CH_dom Pfam 428 523
IPR001715 CH_dom Pfam 615 740
IPR001715 CH_dom Pfam 187 269
IPR036872 CH_dom_sf Gene3D 278 407
IPR036872 CH_dom_sf Gene3D 278 407
IPR036872 CH_dom_sf SUPERFAMILY 581 738
IPR036872 CH_dom_sf SUPERFAMILY 153 521
IPR001715 CH_dom ProSiteProfiles 426 532
IPR001715 CH_dom Pfam 186 270
IPR001715 CH_dom Pfam 615 740
IPR001715 CH_dom Pfam 301 403
IPR001715 CH_dom Pfam 428 523
IPR001715 CH_dom ProSiteProfiles 612 741
IPR036872 CH_dom_sf Gene3D 422 535
IPR036872 CH_dom_sf Gene3D 151 277
IPR001715 CH_dom CDD 301 402
IPR001715 CH_dom CDD 193 270
IPR036872 CH_dom_sf Gene3D 605 738
IPR001715 CH_dom ProSiteProfiles 300 404
IPR001715 CH_dom ProSiteProfiles 155 272
IPR001589 Actinin_actin-bd_CS ProSitePatterns 244 268
IPR001715 CH_dom SMART 302 402
IPR001715 CH_dom SMART 428 527
IPR001715 CH_dom SMART 157 270
IPR001715 CH_dom SMART 614 739
IPR001715 CH_dom CDD 427 521
IPR039959 Fimbrin/Plastin PANTHER 1 779

No CAZYmes available for this sequence

No external refs found!