1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d041005_T001

Zm00001d041005_T001


Description : SU(VAR)3-9 homolog 1


Gene families : OG_01_0023811 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0023811_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d041005_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d041005_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_113
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_62


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
BP GO:0016571 histone methylation ISM GOs from InterProScan
MF GO:0018024 obsolete histone lysine N-methyltransferase activity ISM GOs from InterProScan
BP GO:0034968 histone lysine methylation ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR025794 H3-K9-MeTrfase_plant ProSiteProfiles 101 699
IPR007728 Pre-SET_dom Pfam 417 518
IPR036987 SRA-YDG_sf Gene3D 218 397
IPR007728 Pre-SET_dom ProSiteProfiles 461 523
IPR046341 SET_dom_sf SUPERFAMILY 401 672
IPR003616 Post-SET_dom ProSiteProfiles 684 697
IPR001214 SET_dom SMART 526 671
IPR001214 SET_dom ProSiteProfiles 526 665
IPR015947 PUA-like_sf SUPERFAMILY 217 408
IPR007728 Pre-SET_dom SMART 413 510
IPR046341 SET_dom_sf Gene3D 398 670
IPR003105 SRA_YDG ProSiteProfiles 235 384
IPR003105 SRA_YDG SMART 230 388
IPR001214 SET_dom Pfam 538 665
IPR003105 SRA_YDG Pfam 234 388
IPR003616 Post-SET_dom ProSiteProfiles 684 697
IPR001214 SET_dom ProSiteProfiles 526 665
IPR025794 H3-K9-MeTrfase_plant ProSiteProfiles 101 699
IPR001214 SET_dom Pfam 538 665
IPR003105 SRA_YDG ProSiteProfiles 235 384
IPR007728 Pre-SET_dom Pfam 417 518
IPR015947 PUA-like_sf SUPERFAMILY 217 408
IPR007728 Pre-SET_dom ProSiteProfiles 461 523
IPR007728 Pre-SET_dom SMART 413 510
IPR001214 SET_dom SMART 526 671
IPR036987 SRA-YDG_sf Gene3D 218 397
IPR003105 SRA_YDG SMART 230 388
IPR003105 SRA_YDG Pfam 234 388

No CAZYmes available for this sequence

No external refs found!