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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0002079 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002079_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d041380_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d041380_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_274 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_7 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 309 | 378 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 399 | 535 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 208 | 308 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 244 | 278 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 480 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 279 | 313 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 314 | 348 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 83 | 197 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 137 | 170 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 317 | 350 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 281 | 314 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 352 | 385 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 276 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 308 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 419 | 453 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 313 | 361 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 480 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 208 | 308 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 399 | 535 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 309 | 378 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 83 | 197 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 419 | 453 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 279 | 313 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 314 | 348 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 313 | 361 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 308 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 276 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 247 | 280 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 137 | 170 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 281 | 314 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 352 | 385 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 317 | 350 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 244 | 278 |
No CAZYmes available for this sequence
| No external refs found! |