Zm00001d041475_T001

Description : GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain

Gene families : OG_01_0013847 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013847_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d041475_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d041475_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_275

Type	GO Term	Name	Evidence	Source
BP	GO:0000390	spliceosomal complex disassembly	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005672	transcription factor TFIIA complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0032988	protein-RNA complex disassembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015871	TFIIA_gsu_C	CDD	816	838
IPR000467	G_patch_dom	Pfam	172	213
IPR045211	TFP11/STIP/Ntr1	PANTHER	1	790
IPR009088	TFIIA_b-brl	Gene3D	813	858
IPR022159	STIP/TFIP11_N	Pfam	5	115
IPR009088	TFIIA_b-brl	SUPERFAMILY	815	841
IPR000467	G_patch_dom	SMART	169	215
IPR022783	GCFC_dom	Pfam	388	660
IPR015871	TFIIA_gsu_C	Pfam	816	840
IPR000467	G_patch_dom	ProSiteProfiles	171	217
IPR022783	GCFC_dom	Pfam	388	660
IPR045211	TFP11/STIP/Ntr1	PANTHER	1	805
IPR015871	TFIIA_gsu_C	CDD	816	838
IPR000467	G_patch_dom	Pfam	172	213
IPR000467	G_patch_dom	ProSiteProfiles	171	217
IPR009088	TFIIA_b-brl	SUPERFAMILY	815	841
IPR015871	TFIIA_gsu_C	Pfam	816	845
IPR000467	G_patch_dom	SMART	169	215
IPR009088	TFIIA_b-brl	Gene3D	813	858
IPR022159	STIP/TFIP11_N	Pfam	5	115

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d041475_T001

Expression Profile

Co-expression Networks

Functional Annotation