Zm00001d041639_T001

Description : U2 snRNP auxiliary factor small subunit, putative

Gene families : OG_01_0000793 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000793_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d041639_T001	No neighbors in network
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d041639_T001
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_54

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0089701	U2AF complex	ISM	GOs from InterProScan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009145	U2AF_small	PANTHER	1	166
IPR036855	Znf_CCCH_sf	SUPERFAMILY	16	41
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	43	145
IPR000504	RRM_dom	Pfam	83	139
IPR009145	U2AF_small	PRINTS	75	90
IPR009145	U2AF_small	PRINTS	18	37
IPR009145	U2AF_small	PRINTS	130	154
IPR009145	U2AF_small	PRINTS	37	57
IPR009145	U2AF_small	PRINTS	103	125
IPR000571	Znf_CCCH	ProSiteProfiles	12	40
IPR000504	RRM_dom	ProSiteProfiles	44	146
IPR035979	RBD_domain_sf	SUPERFAMILY	77	149
IPR000571	Znf_CCCH	Pfam	14	38
IPR009145	U2AF_small	PRINTS	75	90
IPR009145	U2AF_small	PRINTS	18	37
IPR009145	U2AF_small	PRINTS	130	154
IPR009145	U2AF_small	PRINTS	37	57
IPR009145	U2AF_small	PRINTS	103	125
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	43	145
IPR000504	RRM_dom	ProSiteProfiles	44	146
IPR000504	RRM_dom	Pfam	83	139
IPR036855	Znf_CCCH_sf	SUPERFAMILY	16	41
IPR000571	Znf_CCCH	Pfam	14	38
IPR000571	Znf_CCCH	ProSiteProfiles	12	40
IPR035979	RBD_domain_sf	SUPERFAMILY	77	149
IPR009145	U2AF_small	PANTHER	1	167

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d041639_T001

Expression Profile

Co-expression Networks

Functional Annotation