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  5. Zm00001d041703_T001

Zm00001d041703_T001


Description : pre-mRNA splicing factor-related


Gene families : OG_01_0006361 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006361_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d041703_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d041703_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 724 927
IPR003107 HAT SMART 370 399
IPR003107 HAT SMART 568 600
IPR003107 HAT SMART 337 369
IPR003107 HAT SMART 636 668
IPR003107 HAT SMART 771 803
IPR003107 HAT SMART 602 634
IPR003107 HAT SMART 303 335
IPR003107 HAT SMART 869 901
IPR003107 HAT SMART 670 701
IPR003107 HAT SMART 737 769
IPR003107 HAT SMART 805 837
IPR003107 HAT SMART 461 490
IPR003107 HAT SMART 703 735
IPR003107 HAT SMART 428 460
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 439 510
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 301 503
IPR011990 TPR-like_helical_dom_sf Gene3D 721 938
IPR011990 TPR-like_helical_dom_sf Gene3D 418 617
IPR045075 Syf1-like PANTHER 61 946
IPR010491 PRP1_N Pfam 37 202
IPR011990 TPR-like_helical_dom_sf Gene3D 618 705
IPR011990 TPR-like_helical_dom_sf Gene3D 283 368
IPR019734 TPR_repeat SMART 855 888
IPR019734 TPR_repeat SMART 444 477
IPR019734 TPR_repeat SMART 689 722
IPR019734 TPR_repeat SMART 723 756
IPR019734 TPR_repeat SMART 791 824
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 516 724
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 724 927
IPR045075 Syf1-like PANTHER 29 955
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 439 510
IPR011990 TPR-like_helical_dom_sf Gene3D 418 617
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 301 503
IPR010491 PRP1_N Pfam 37 202
IPR003107 HAT SMART 370 399
IPR003107 HAT SMART 568 600
IPR003107 HAT SMART 337 369
IPR003107 HAT SMART 636 668
IPR003107 HAT SMART 771 803
IPR003107 HAT SMART 602 634
IPR003107 HAT SMART 303 335
IPR003107 HAT SMART 670 701
IPR003107 HAT SMART 737 769
IPR003107 HAT SMART 869 901
IPR003107 HAT SMART 805 837
IPR003107 HAT SMART 461 490
IPR003107 HAT SMART 703 735
IPR003107 HAT SMART 428 460
IPR019734 TPR_repeat SMART 855 888
IPR019734 TPR_repeat SMART 444 477
IPR019734 TPR_repeat SMART 689 722
IPR019734 TPR_repeat SMART 723 756
IPR019734 TPR_repeat SMART 791 824
IPR011990 TPR-like_helical_dom_sf Gene3D 618 705
IPR011990 TPR-like_helical_dom_sf Gene3D 283 368
IPR011990 TPR-like_helical_dom_sf Gene3D 721 938
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 516 724

No CAZYmes available for this sequence

No external refs found!