Sevir.2G117800.1

Description : Ribosomal protein L2 family

Gene families : OG_01_0002233 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002233_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G117800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G117800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_16

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014726	Ribosomal_uL2_dom3	Gene3D	170	247
IPR022666	Ribosomal_uL2_RNA-bd_dom	Pfam	13	90
IPR008991	Translation_prot_SH3-like_sf	SUPERFAMILY	99	246
IPR002171	Ribosomal_uL2	PIRSF	1	255
IPR022669	Ribosomal_uL2_C	SMART	96	231
IPR022669	Ribosomal_uL2_C	Pfam	98	225
IPR023672	Ribosomal_uL2_arc	Hamap	1	246
IPR022671	Ribosomal_uL2_CS	ProSitePatterns	197	208
IPR014722	Rib_uL2_dom2	Gene3D	90	169
IPR002171	Ribosomal_uL2	SMART	11	90
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1	96
IPR002171	Ribosomal_uL2	PANTHER	1	260

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.2G117800.1

Expression Profile

Co-expression Networks

Functional Annotation