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  5. Zm00001d042091_T002

Zm00001d042091_T002


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005530 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005530_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042091_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042091_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0031124 mRNA 3'-end processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 318 462
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 129 317
IPR019775 WD40_repeat_CS ProSitePatterns 293 307
IPR001680 WD40_rpt ProSiteProfiles 148 180
IPR001680 WD40_rpt ProSiteProfiles 232 273
IPR045245 Pfs2-like PANTHER 53 549
IPR001680 WD40_rpt ProSiteProfiles 316 357
IPR001680 WD40_rpt ProSiteProfiles 274 315
IPR001680 WD40_rpt Pfam 353 390
IPR001680 WD40_rpt Pfam 188 221
IPR001680 WD40_rpt Pfam 403 433
IPR001680 WD40_rpt Pfam 311 348
IPR001680 WD40_rpt Pfam 233 264
IPR001680 WD40_rpt Pfam 271 306
IPR001680 WD40_rpt SMART 351 391
IPR001680 WD40_rpt SMART 136 180
IPR001680 WD40_rpt SMART 309 348
IPR001680 WD40_rpt SMART 395 434
IPR001680 WD40_rpt SMART 224 264
IPR001680 WD40_rpt SMART 183 222
IPR001680 WD40_rpt SMART 267 306
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 148 433
IPR001680 WD40_rpt ProSiteProfiles 190 222
IPR001680 WD40_rpt ProSiteProfiles 358 390
IPR001680 WD40_rpt ProSiteProfiles 402 433
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 148 433
IPR001680 WD40_rpt ProSiteProfiles 190 222
IPR001680 WD40_rpt Pfam 404 433
IPR001680 WD40_rpt Pfam 188 221
IPR001680 WD40_rpt Pfam 270 306
IPR001680 WD40_rpt Pfam 233 264
IPR001680 WD40_rpt Pfam 311 348
IPR001680 WD40_rpt Pfam 353 390
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 318 462
IPR001680 WD40_rpt ProSiteProfiles 402 433
IPR001680 WD40_rpt ProSiteProfiles 358 390
IPR045245 Pfs2-like PANTHER 58 697
IPR019775 WD40_repeat_CS ProSitePatterns 293 307
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 129 317
IPR001680 WD40_rpt ProSiteProfiles 232 273
IPR001680 WD40_rpt ProSiteProfiles 316 357
IPR001680 WD40_rpt ProSiteProfiles 148 180
IPR001680 WD40_rpt SMART 351 391
IPR001680 WD40_rpt SMART 136 180
IPR001680 WD40_rpt SMART 395 434
IPR001680 WD40_rpt SMART 309 348
IPR001680 WD40_rpt SMART 224 264
IPR001680 WD40_rpt SMART 183 222
IPR001680 WD40_rpt SMART 267 306
IPR001680 WD40_rpt ProSiteProfiles 274 315

No CAZYmes available for this sequence

No external refs found!