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  5. Zm00001d042460_T002

Zm00001d042460_T002


Description : Transcriptional factor B3 family protein


Gene families : OG_01_0013091 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013091_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042460_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042460_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_27
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_49


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003340 B3_DNA-bd ProSiteProfiles 592 687
IPR003340 B3_DNA-bd SMART 94 184
IPR003340 B3_DNA-bd SMART 595 689
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 89 185
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 91 184
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 609 682
IPR003340 B3_DNA-bd CDD 611 687
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 591 688
IPR003340 B3_DNA-bd ProSiteProfiles 91 184
IPR003340 B3_DNA-bd CDD 92 181
IPR003340 B3_DNA-bd Pfam 94 181
IPR003340 B3_DNA-bd Pfam 621 686
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 89 185
IPR003340 B3_DNA-bd SMART 595 689
IPR003340 B3_DNA-bd SMART 94 184
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 91 184
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 591 688
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 609 682
IPR003340 B3_DNA-bd ProSiteProfiles 592 687
IPR003340 B3_DNA-bd CDD 92 181
IPR003340 B3_DNA-bd ProSiteProfiles 91 184
IPR039218 REM_fam PANTHER 12 692
IPR003340 B3_DNA-bd CDD 611 687
IPR003340 B3_DNA-bd Pfam 620 685
IPR003340 B3_DNA-bd Pfam 94 181

No CAZYmes available for this sequence

No external refs found!