Zm00001d042468_T004

Description : structural maintenance of chromosomes 2

Gene families : OG_01_0009365 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009365_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042468_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042468_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	ISM	GOs from InterProScan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003395	RecF/RecN/SMC_N	Pfam	937	1244
IPR027417	P-loop_NTPase	Gene3D	1078	1256
IPR024704	SMC	PIRSF	71	1246
IPR010935	SMC_hinge	Pfam	589	709
IPR027417	P-loop_NTPase	SUPERFAMILY	72	1240
IPR027120	Smc2_ABC	CDD	72	227
IPR010935	SMC_hinge	SMART	589	709
IPR036277	SMC_hinge_sf	SUPERFAMILY	548	756
IPR027417	P-loop_NTPase	Gene3D	72	272
IPR003395	RecF/RecN/SMC_N	Pfam	73	588
IPR003395	RecF/RecN/SMC_N	Pfam	937	1244
IPR003395	RecF/RecN/SMC_N	Pfam	73	588
IPR010935	SMC_hinge	Pfam	589	709
IPR027120	Smc2_ABC	CDD	72	227
IPR010935	SMC_hinge	SMART	589	709
IPR027417	P-loop_NTPase	Gene3D	1078	1256
IPR036277	SMC_hinge_sf	SUPERFAMILY	548	756
IPR024704	SMC	PIRSF	71	1246
IPR027417	P-loop_NTPase	Gene3D	72	272
IPR027417	P-loop_NTPase	SUPERFAMILY	72	1240

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d042468_T004

Expression Profile

Co-expression Networks

Functional Annotation