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  5. Zm00001d042602_T001

Zm00001d042602_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0018351 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018351_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042602_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042602_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_231


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 114 144
IPR002885 Pentatricopeptide_rpt Pfam 187 210
IPR002885 Pentatricopeptide_rpt Pfam 288 310
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR002885 Pentatricopeptide_rpt Pfam 213 260
IPR002885 Pentatricopeptide_rpt Pfam 9 47
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 293 370
IPR002885 Pentatricopeptide_rpt NCBIfam 10 43
IPR002885 Pentatricopeptide_rpt NCBIfam 215 248
IPR002885 Pentatricopeptide_rpt NCBIfam 114 148
IPR045215 PPR_prot_At1g15510 PANTHER 9 410
IPR032867 DYW_dom Pfam 428 520
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 112 146
IPR011990 TPR-like_helical_dom_sf Gene3D 9 165
IPR011990 TPR-like_helical_dom_sf Gene3D 214 407
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 8 42
IPR046848 E_motif Pfam 330 391
IPR011990 TPR-like_helical_dom_sf Gene3D 9 165
IPR011990 TPR-like_helical_dom_sf Gene3D 214 407
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 8 42
IPR002885 Pentatricopeptide_rpt Pfam 187 210
IPR002885 Pentatricopeptide_rpt Pfam 114 144
IPR002885 Pentatricopeptide_rpt Pfam 288 310
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 293 370
IPR002885 Pentatricopeptide_rpt Pfam 9 47
IPR002885 Pentatricopeptide_rpt Pfam 213 259
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 112 146
IPR002885 Pentatricopeptide_rpt TIGRFAM 10 43
IPR002885 Pentatricopeptide_rpt TIGRFAM 215 248
IPR002885 Pentatricopeptide_rpt TIGRFAM 114 148
IPR032867 DYW_dom Pfam 386 510
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247

No CAZYmes available for this sequence

No external refs found!