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  5. Zm00001d042771_T001

Zm00001d042771_T001


Description : chitinase A


Gene families : OG_01_0002770 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002770_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042771_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042771_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_48
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_165


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR045321 Cts1-like CDD 35 305
IPR001579 Glyco_hydro_18_chit_AS ProSitePatterns 153 161
IPR001223 Glyco_hydro18_cat ProSiteProfiles 35 307
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 33 304
IPR001223 Glyco_hydro18_cat Pfam 37 258
IPR001223 Glyco_hydro18_cat ProSiteProfiles 35 307
IPR045321 Cts1-like CDD 35 305
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 33 304
IPR001223 Glyco_hydro18_cat Pfam 37 260
IPR001579 Glyco_hydro_18_chit_AS ProSitePatterns 153 161
HMM Family HMM Length Query Length e-Value Query Start Query End
GH18 296 308 6.3e-27 36 256
No external refs found!