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  5. Zm00001d042794_T003

Zm00001d042794_T003


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005294 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005294_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042794_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042794_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_31
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006283 transcription-coupled nucleotide-excision repair ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 300 341
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR020472 G-protein_beta_WD-40_rep PRINTS 119 133
IPR020472 G-protein_beta_WD-40_rep PRINTS 319 333
IPR001680 WD40_rpt SMART 135 176
IPR001680 WD40_rpt SMART 92 132
IPR001680 WD40_rpt SMART 179 219
IPR001680 WD40_rpt SMART 380 419
IPR001680 WD40_rpt SMART 34 73
IPR001680 WD40_rpt SMART 293 332
IPR019775 WD40_repeat_CS ProSitePatterns 319 333
IPR001680 WD40_rpt Pfam 99 132
IPR001680 WD40_rpt Pfam 182 219
IPR001680 WD40_rpt Pfam 301 332
IPR001680 WD40_rpt Pfam 382 419
IPR001680 WD40_rpt ProSiteProfiles 99 141
IPR001680 WD40_rpt ProSiteProfiles 387 419
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 422
IPR019775 WD40_repeat_CS ProSitePatterns 206 220
IPR042238 Rad28/ERCC8/Ckn1/ATCSA-1 PANTHER 1 445
IPR001680 WD40_rpt ProSiteProfiles 186 228
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 40 441
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR020472 G-protein_beta_WD-40_rep PRINTS 119 133
IPR020472 G-protein_beta_WD-40_rep PRINTS 319 333
IPR001680 WD40_rpt ProSiteProfiles 186 228
IPR019775 WD40_repeat_CS ProSitePatterns 206 220
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 422
IPR001680 WD40_rpt ProSiteProfiles 99 141
IPR001680 WD40_rpt SMART 135 176
IPR001680 WD40_rpt SMART 92 132
IPR001680 WD40_rpt SMART 179 219
IPR001680 WD40_rpt SMART 380 419
IPR001680 WD40_rpt SMART 34 73
IPR001680 WD40_rpt SMART 293 332
IPR001680 WD40_rpt ProSiteProfiles 387 419
IPR019775 WD40_repeat_CS ProSitePatterns 319 333
IPR001680 WD40_rpt ProSiteProfiles 300 341
IPR001680 WD40_rpt Pfam 182 219
IPR001680 WD40_rpt Pfam 381 419
IPR001680 WD40_rpt Pfam 301 332
IPR042238 Rad28/ERCC8/Ckn1/ATCSA-1 PANTHER 1 445
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 40 441

No CAZYmes available for this sequence

No external refs found!