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  5. Zm00001d042901_T001

Zm00001d042901_T001


Description : laccase 2


Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042901_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042901_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_248


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 545 556
IPR011706 Cu-oxidase_C Pfam 433 564
IPR034285 CuRO_2_LCC CDD 174 322
IPR008972 Cupredoxin Gene3D 387 582
IPR008972 Cupredoxin Gene3D 31 159
IPR045087 Cu-oxidase_fam PANTHER 40 575
IPR034289 CuRO_3_LCC CDD 428 565
IPR001117 Cu-oxidase_2nd Pfam 173 323
IPR017761 Laccase NCBIfam 40 582
IPR033138 Cu_oxidase_CS ProSitePatterns 540 560
IPR008972 Cupredoxin Gene3D 171 360
IPR008972 Cupredoxin SUPERFAMILY 367 582
IPR008972 Cupredoxin SUPERFAMILY 35 184
IPR011707 Cu-oxidase-like_N Pfam 46 160
IPR008972 Cupredoxin SUPERFAMILY 167 582
IPR034288 CuRO_1_LCC CDD 43 159
IPR033138 Cu_oxidase_CS ProSitePatterns 540 560
IPR008972 Cupredoxin Gene3D 171 360
IPR034285 CuRO_2_LCC CDD 174 322
IPR001117 Cu-oxidase_2nd Pfam 173 323
IPR008972 Cupredoxin Gene3D 387 582
IPR008972 Cupredoxin Gene3D 31 159
IPR034288 CuRO_1_LCC CDD 43 159
IPR011706 Cu-oxidase_C Pfam 434 564
IPR017761 Laccase TIGRFAM 40 582
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 545 556
IPR045087 Cu-oxidase_fam PANTHER 13 582
IPR008972 Cupredoxin SUPERFAMILY 167 582
IPR034289 CuRO_3_LCC CDD 428 565
IPR011707 Cu-oxidase-like_N Pfam 46 160
IPR008972 Cupredoxin SUPERFAMILY 35 184
IPR008972 Cupredoxin SUPERFAMILY 367 582
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 583 8.4e-124 51 556
No external refs found!