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  5. Zm00001d042946_T001

Zm00001d042946_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0007119 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007119_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d042946_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d042946_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_56
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_79


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018082 AmbAllergen PRINTS 93 109
IPR018082 AmbAllergen PRINTS 163 184
IPR018082 AmbAllergen PRINTS 38 55
IPR012334 Pectin_lyas_fold Gene3D 24 253
IPR045032 PEL PANTHER 31 249
IPR002022 Pec_lyase Pfam 92 234
IPR002022 Pec_lyase SMART 85 248
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 36 249
IPR012334 Pectin_lyas_fold Gene3D 24 253
IPR045032 PEL PANTHER 21 250
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 36 249
IPR002022 Pec_lyase SMART 85 248
IPR002022 Pec_lyase Pfam 92 234
IPR018082 AmbAllergen PRINTS 93 109
IPR018082 AmbAllergen PRINTS 163 184
IPR018082 AmbAllergen PRINTS 38 55

No CAZYmes available for this sequence

No external refs found!