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  5. Zm00001d043778_T001

Zm00001d043778_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0012462 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012462_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d043778_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d043778_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_152


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 189 347
IPR011990 TPR-like_helical_dom_sf Gene3D 364 466
IPR011990 TPR-like_helical_dom_sf Gene3D 467 554
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 451 486
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 376 410
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 416 450
IPR033443 PPR_long Pfam 224 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 522 552
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 487 521
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 629 663
IPR002885 Pentatricopeptide_rpt Pfam 379 405
IPR002885 Pentatricopeptide_rpt Pfam 415 464
IPR002885 Pentatricopeptide_rpt Pfam 486 534
IPR002885 Pentatricopeptide_rpt Pfam 560 604
IPR011990 TPR-like_helical_dom_sf Gene3D 573 713
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 558 592
IPR002885 Pentatricopeptide_rpt NCBIfam 489 522
IPR002885 Pentatricopeptide_rpt NCBIfam 453 487
IPR002885 Pentatricopeptide_rpt NCBIfam 524 552
IPR002885 Pentatricopeptide_rpt NCBIfam 561 594
IPR002885 Pentatricopeptide_rpt NCBIfam 418 448
IPR002885 Pentatricopeptide_rpt NCBIfam 379 405
IPR002885 Pentatricopeptide_rpt NCBIfam 260 291
IPR002885 Pentatricopeptide_rpt TIGRFAM 379 405
IPR002885 Pentatricopeptide_rpt TIGRFAM 524 552
IPR002885 Pentatricopeptide_rpt TIGRFAM 561 594
IPR002885 Pentatricopeptide_rpt TIGRFAM 489 522
IPR002885 Pentatricopeptide_rpt TIGRFAM 418 448
IPR002885 Pentatricopeptide_rpt TIGRFAM 260 291
IPR002885 Pentatricopeptide_rpt TIGRFAM 453 487
IPR011990 TPR-like_helical_dom_sf Gene3D 467 554
IPR011990 TPR-like_helical_dom_sf Gene3D 364 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 629 663
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 376 410
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt Pfam 379 405
IPR011990 TPR-like_helical_dom_sf Gene3D 189 347
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 558 592
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 451 486
IPR011990 TPR-like_helical_dom_sf Gene3D 573 713
IPR033443 PPR_long Pfam 224 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 416 450
IPR002885 Pentatricopeptide_rpt Pfam 560 604
IPR002885 Pentatricopeptide_rpt Pfam 415 464
IPR002885 Pentatricopeptide_rpt Pfam 486 534
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 522 552
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 487 521

No CAZYmes available for this sequence

No external refs found!