Zm00001d043857_T001

Description : TBP-associated factor 11

Gene families : OG_01_0773897 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): No tree available for this family

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d043857_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d043857_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_274

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0051123	RNA polymerase II preinitiation complex assembly	ISM	GOs from InterProScan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0070897	transcription preinitiation complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009072	Histone-fold	Gene3D	593	676
IPR006809	TAFII28_dom	Pfam	589	668
IPR005135	Endo/exonuclease/phosphatase	Pfam	154	306
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	154	370
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	155	357
IPR006809	TAFII28_dom	CDD	593	670
IPR009072	Histone-fold	SUPERFAMILY	593	676
IPR045127	TAF11-like	PANTHER	588	685
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	155	357
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	154	370
IPR006809	TAFII28_dom	Pfam	589	668
IPR045127	TAF11-like	PANTHER	2	108
IPR045127	TAF11-like	PANTHER	588	685
IPR006809	TAFII28_dom	CDD	593	670
IPR009072	Histone-fold	Gene3D	593	676
IPR009072	Histone-fold	SUPERFAMILY	593	676

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d043857_T001

Expression Profile

Co-expression Networks

Functional Annotation