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  5. Zm00001d043981_T005

Zm00001d043981_T005


Description : PNAS-3 related


Gene families : OG_01_0007424 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007424_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d043981_T005
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d043981_T005
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6


Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR041054 Rrp40_N_euk Pfam 33 70
IPR026699 Exosome_RNA_bind1/RRP40/RRP4 PANTHER 11 234
IPR049469 RRP40_KH-I CDD 157 235
IPR036612 KH_dom_type_1_sf SUPERFAMILY 157 237
IPR012340 NA-bd_OB-fold SUPERFAMILY 69 162
IPR037319 Rrp40_S1 CDD 70 155
IPR012340 NA-bd_OB-fold Gene3D 77 153
IPR004088 KH_dom_type_1 Pfam 158 205
IPR036612 KH_dom_type_1_sf Gene3D 154 237
IPR026699 Exosome_RNA_bind1/RRP40/RRP4 PANTHER 10 236
IPR036612 KH_dom_type_1_sf SUPERFAMILY 157 237
IPR036612 KH_dom_type_1_sf Gene3D 154 237
IPR012340 NA-bd_OB-fold SUPERFAMILY 69 162
IPR037319 Rrp40_S1 CDD 70 155
IPR004088 KH_dom_type_1 Pfam 158 206

No CAZYmes available for this sequence

No external refs found!