Zm00001d044250_T001

Description : carbamoyl phosphate synthetase B

Gene families : OG_01_0007805 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007805_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d044250_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d044250_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036914	MGS-like_dom_sf	Gene3D	1016	1154
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	918	925
IPR005480	CarbamoylP_synth_lsu_oligo	SMART	489	612
IPR011607	MGS-like_dom	ProSiteProfiles	1016	1157
IPR011607	MGS-like_dom	Pfam	1036	1122
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	751	955
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	193	400
IPR011607	MGS-like_dom	SMART	1035	1122
IPR005480	CarbamoylP_synth_lsu_oligo	Pfam	492	569
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	787	801
IPR013815	ATP_grasp_subdomain_1	Gene3D	764	833
IPR006275	CarbamoylP_synth_lsu	NCBIfam	71	1133
IPR036914	MGS-like_dom_sf	SUPERFAMILY	1015	1152
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	230	244
IPR011761	ATP-grasp	ProSiteProfiles	756	949
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	621	753
IPR011761	ATP-grasp	ProSiteProfiles	198	394
IPR006275	CarbamoylP_synth_lsu	Hamap	66	1143
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	71	192
IPR036897	CarbamoylP_synth_lsu_oligo_sf	SUPERFAMILY	461	619
IPR033937	MGS_CPS_CarB	CDD	1022	1131
IPR036897	CarbamoylP_synth_lsu_oligo_sf	Gene3D	475	618
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	113	123
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	363	392
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	234	246
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	270	289
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	445	463
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	84	98
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	305	322
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	363	370
IPR006275	CarbamoylP_synth_lsu	Hamap	70	1150
IPR011607	MGS-like_dom	ProSiteProfiles	1016	1157
IPR036897	CarbamoylP_synth_lsu_oligo_sf	SUPERFAMILY	461	619
IPR011607	MGS-like_dom	Pfam	1036	1122
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	193	400
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	751	955
IPR036897	CarbamoylP_synth_lsu_oligo_sf	Gene3D	475	618
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	113	123
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	363	392
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	234	246
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	270	289
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	445	463
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	84	98
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	305	322
IPR006275	CarbamoylP_synth_lsu	Hamap	70	1150
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	621	753
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	787	801
IPR036914	MGS-like_dom_sf	SUPERFAMILY	1015	1152
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	918	925
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	363	370
IPR036914	MGS-like_dom_sf	Gene3D	1016	1154
IPR006275	CarbamoylP_synth_lsu	TIGRFAM	71	1133
IPR005480	CarbamoylP_synth_lsu_oligo	Pfam	492	569
IPR006275	CarbamoylP_synth_lsu	Hamap	66	1143
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	71	192
IPR005480	CarbamoylP_synth_lsu_oligo	SMART	489	612
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	230	244
IPR011761	ATP-grasp	ProSiteProfiles	756	949
IPR013815	ATP_grasp_subdomain_1	Gene3D	764	833
IPR033937	MGS_CPS_CarB	CDD	1022	1131
IPR011761	ATP-grasp	ProSiteProfiles	198	394
IPR011607	MGS-like_dom	SMART	1035	1122

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d044250_T001

Expression Profile

Co-expression Networks

Functional Annotation