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  5. Zm00001d044353_T001

Zm00001d044353_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007885 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007885_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d044353_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d044353_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR046848 E_motif Pfam 612 672
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 290 324
IPR002885 Pentatricopeptide_rpt Pfam 190 218
IPR002885 Pentatricopeptide_rpt Pfam 162 187
IPR002885 Pentatricopeptide_rpt NCBIfam 394 427
IPR002885 Pentatricopeptide_rpt NCBIfam 190 217
IPR002885 Pentatricopeptide_rpt NCBIfam 292 326
IPR002885 Pentatricopeptide_rpt NCBIfam 495 528
IPR011990 TPR-like_helical_dom_sf Gene3D 348 444
IPR011990 TPR-like_helical_dom_sf Gene3D 250 347
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 493 527
IPR011990 TPR-like_helical_dom_sf Gene3D 445 691
IPR002885 Pentatricopeptide_rpt Pfam 392 439
IPR002885 Pentatricopeptide_rpt Pfam 492 540
IPR002885 Pentatricopeptide_rpt Pfam 290 337
IPR011990 TPR-like_helical_dom_sf Gene3D 95 239
IPR045215 PPR_prot_At1g15510 PANTHER 345 689
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 157 191
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 392 426
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 493 527
IPR002885 Pentatricopeptide_rpt Pfam 190 218
IPR002885 Pentatricopeptide_rpt Pfam 162 187
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 290 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 394 427
IPR002885 Pentatricopeptide_rpt TIGRFAM 292 326
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 217
IPR002885 Pentatricopeptide_rpt TIGRFAM 495 528
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 157 191
IPR011990 TPR-like_helical_dom_sf Gene3D 348 444
IPR011990 TPR-like_helical_dom_sf Gene3D 250 347
IPR011990 TPR-like_helical_dom_sf Gene3D 445 691
IPR011990 TPR-like_helical_dom_sf Gene3D 95 239
IPR002885 Pentatricopeptide_rpt Pfam 392 439
IPR002885 Pentatricopeptide_rpt Pfam 492 540
IPR002885 Pentatricopeptide_rpt Pfam 290 336

No CAZYmes available for this sequence

No external refs found!