Zm00001d044358_T002

Description : RAD3-like DNA-binding helicase protein

Gene families : OG_01_0001252 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001252_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d044358_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d044358_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_277
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003678	DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	Gene3D	16	303
IPR027417	P-loop_NTPase	SUPERFAMILY	28	696
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3	ProSiteProfiles	7	302
IPR010614	RAD3-like_helicase_DEAD	Pfam	109	268
IPR027417	P-loop_NTPase	Gene3D	500	721
IPR006554	Helicase-like_DEXD_c2	SMART	9	293
IPR045028	DinG/Rad3-like	PANTHER	6	744
IPR006555	ATP-dep_Helicase_C	Pfam	524	717
IPR006555	ATP-dep_Helicase_C	SMART	542	704
IPR013020	Rad3/Chl1-like	NCBIfam	11	728
IPR006554	Helicase-like_DEXD_c2	SMART	9	293
IPR045028	DinG/Rad3-like	PANTHER	2	759
IPR006555	ATP-dep_Helicase_C	Pfam	524	717
IPR027417	P-loop_NTPase	SUPERFAMILY	28	696
IPR027417	P-loop_NTPase	Gene3D	16	303
IPR027417	P-loop_NTPase	Gene3D	500	721
IPR013020	Rad3/Chl1-like	TIGRFAM	11	728
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3	ProSiteProfiles	7	302
IPR006555	ATP-dep_Helicase_C	SMART	542	704
IPR010614	RAD3-like_helicase_DEAD	Pfam	109	268

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d044358_T002

Expression Profile

Co-expression Networks

Functional Annotation