Zm00001d044552_T006

Description : cleavage and polyadenylation specificity factor 100

Gene families : OG_01_0002702 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002702_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d044552_T006
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d044552_T006
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_288
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_193

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	ISM	GOs from InterProScan
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006378	mRNA polyadenylation	ISM	GOs from InterProScan
BP	GO:0006379	obsolete mRNA cleavage	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035639	CPSF2_MBL	CDD	8	203
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	5	608
IPR022712	Beta_Casp	Pfam	242	356
IPR011108	RMMBL	Pfam	540	600
IPR001279	Metallo-B-lactamas	Pfam	22	193
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	10	254
IPR022712	Beta_Casp	SMART	242	359
IPR001279	Metallo-B-lactamas	SMART	17	222
IPR027075	CPSF2	PANTHER	1	686
IPR025069	Cpsf2_C	Pfam	702	763
IPR022712	Beta_Casp	Pfam	242	356
IPR001279	Metallo-B-lactamas	Pfam	22	188
IPR011108	RMMBL	Pfam	539	600
IPR001279	Metallo-B-lactamas	SMART	17	222
IPR022712	Beta_Casp	SMART	242	359
IPR027075	CPSF2	PANTHER	1	765
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	5	608
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	10	254
IPR035639	CPSF2_MBL	CDD	8	203
IPR025069	Cpsf2_C	Pfam	654	763

No CAZYmes available for this sequence

External Links

No external refs found!