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  5. Zm00001d044825_T001

Zm00001d044825_T001


Description : mitochondrial editing factor 9


Gene families : OG_01_0014035 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014035_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d044825_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d044825_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_134
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 367 401
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR011990 TPR-like_helical_dom_sf Gene3D 37 222
IPR011990 TPR-like_helical_dom_sf Gene3D 334 432
IPR011990 TPR-like_helical_dom_sf Gene3D 230 333
IPR011990 TPR-like_helical_dom_sf Gene3D 495 652
IPR002885 Pentatricopeptide_rpt NCBIfam 338 366
IPR002885 Pentatricopeptide_rpt NCBIfam 470 503
IPR002885 Pentatricopeptide_rpt NCBIfam 133 160
IPR002885 Pentatricopeptide_rpt NCBIfam 276 306
IPR002885 Pentatricopeptide_rpt NCBIfam 307 329
IPR002885 Pentatricopeptide_rpt NCBIfam 68 98
IPR002885 Pentatricopeptide_rpt NCBIfam 233 255
IPR002885 Pentatricopeptide_rpt NCBIfam 369 402
IPR002885 Pentatricopeptide_rpt NCBIfam 165 192
IPR046848 E_motif Pfam 589 647
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 206 397
IPR003035 RWP-RK_dom Pfam 789 836
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 66 100
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 336 366
IPR002885 Pentatricopeptide_rpt Pfam 276 304
IPR002885 Pentatricopeptide_rpt Pfam 543 566
IPR002885 Pentatricopeptide_rpt Pfam 441 464
IPR002885 Pentatricopeptide_rpt Pfam 133 161
IPR002885 Pentatricopeptide_rpt Pfam 197 217
IPR002885 Pentatricopeptide_rpt Pfam 99 115
IPR002885 Pentatricopeptide_rpt Pfam 68 96
IPR002885 Pentatricopeptide_rpt Pfam 338 366
IPR002885 Pentatricopeptide_rpt Pfam 307 331
IPR002885 Pentatricopeptide_rpt Pfam 165 192
IPR002885 Pentatricopeptide_rpt Pfam 232 255
IPR003035 RWP-RK_dom ProSiteProfiles 772 856
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 468 502
IPR002885 Pentatricopeptide_rpt Pfam 467 515
IPR002885 Pentatricopeptide_rpt Pfam 367 414
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 131 165
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 468 502
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 131 165
IPR002885 Pentatricopeptide_rpt Pfam 468 514
IPR002885 Pentatricopeptide_rpt Pfam 367 414
IPR011990 TPR-like_helical_dom_sf Gene3D 37 222
IPR011990 TPR-like_helical_dom_sf Gene3D 334 432
IPR011990 TPR-like_helical_dom_sf Gene3D 230 333
IPR011990 TPR-like_helical_dom_sf Gene3D 495 652
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 206 397
IPR003035 RWP-RK_dom ProSiteProfiles 772 856
IPR002885 Pentatricopeptide_rpt Pfam 338 366
IPR002885 Pentatricopeptide_rpt Pfam 307 331
IPR002885 Pentatricopeptide_rpt Pfam 441 464
IPR002885 Pentatricopeptide_rpt Pfam 543 566
IPR002885 Pentatricopeptide_rpt Pfam 68 96
IPR002885 Pentatricopeptide_rpt Pfam 197 217
IPR002885 Pentatricopeptide_rpt Pfam 165 192
IPR002885 Pentatricopeptide_rpt Pfam 99 115
IPR002885 Pentatricopeptide_rpt Pfam 276 304
IPR002885 Pentatricopeptide_rpt Pfam 133 161
IPR002885 Pentatricopeptide_rpt Pfam 232 255
IPR002885 Pentatricopeptide_rpt TIGRFAM 470 503
IPR002885 Pentatricopeptide_rpt TIGRFAM 307 329
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 306
IPR002885 Pentatricopeptide_rpt TIGRFAM 369 402
IPR002885 Pentatricopeptide_rpt TIGRFAM 338 366
IPR002885 Pentatricopeptide_rpt TIGRFAM 165 192
IPR002885 Pentatricopeptide_rpt TIGRFAM 233 255
IPR002885 Pentatricopeptide_rpt TIGRFAM 68 98
IPR002885 Pentatricopeptide_rpt TIGRFAM 133 160
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 367 401
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 336 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 66 100
IPR003035 RWP-RK_dom Pfam 789 836
IPR045215 PPR_prot_At1g15510 PANTHER 33 646

No CAZYmes available for this sequence

No external refs found!