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  5. Zm00001d045887_T004

Zm00001d045887_T004


Description : zinc finger (CCCH-type/C3HC4-type RING finger) family protein


Gene families : OG_01_0004156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004156_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d045887_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d045887_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_296
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_274


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR041367 Znf-CCCH_4 Pfam 40 60
IPR000571 Znf_CCCH ProSiteProfiles 8 35
IPR013083 Znf_RING/FYVE/PHD Gene3D 209 292
IPR017907 Znf_RING_CS ProSitePatterns 247 256
IPR045072 MKRN-like PANTHER 11 337
IPR036855 Znf_CCCH_sf SUPERFAMILY 10 33
IPR000571 Znf_CCCH ProSiteProfiles 154 181
IPR001841 Znf_RING ProSiteProfiles 223 281
IPR000571 Znf_CCCH SMART 38 62
IPR000571 Znf_CCCH SMART 310 338
IPR000571 Znf_CCCH SMART 155 180
IPR000571 Znf_CCCH SMART 9 34
IPR000571 Znf_CCCH ProSiteProfiles 310 339
IPR018957 Znf_C3HC4_RING-type Pfam 223 280
IPR036855 Znf_CCCH_sf SUPERFAMILY 38 60
IPR001841 Znf_RING SMART 223 280
IPR000571 Znf_CCCH ProSiteProfiles 36 63
IPR018957 Znf_C3HC4_RING-type Pfam 223 280
IPR000571 Znf_CCCH ProSiteProfiles 36 63
IPR036855 Znf_CCCH_sf SUPERFAMILY 38 60
IPR000571 Znf_CCCH ProSiteProfiles 8 35
IPR041367 Znf-CCCH_4 Pfam 41 60
IPR000571 Znf_CCCH ProSiteProfiles 154 181
IPR036855 Znf_CCCH_sf SUPERFAMILY 10 33
IPR013083 Znf_RING/FYVE/PHD Gene3D 209 292
IPR045072 MKRN-like PANTHER 11 379
IPR000571 Znf_CCCH SMART 38 62
IPR000571 Znf_CCCH SMART 310 338
IPR000571 Znf_CCCH SMART 155 180
IPR000571 Znf_CCCH SMART 9 34
IPR017907 Znf_RING_CS ProSitePatterns 247 256
IPR000571 Znf_CCCH ProSiteProfiles 310 339
IPR001841 Znf_RING ProSiteProfiles 223 281
IPR001841 Znf_RING SMART 223 280

No CAZYmes available for this sequence

No external refs found!