1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d045974_T001

Zm00001d045974_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0004882 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004882_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d045974_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d045974_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_18
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_22


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 58 410
IPR000743 Glyco_hydro_28 Pfam 74 382
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 59 413
IPR006626 PbH1 SMART 223 244
IPR006626 PbH1 SMART 134 172
IPR006626 PbH1 SMART 370 392
IPR006626 PbH1 SMART 173 193
IPR006626 PbH1 SMART 305 326
IPR006626 PbH1 SMART 246 266
IPR006626 PbH1 SMART 276 297
IPR006626 PbH1 SMART 196 222
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 59 413
IPR000743 Glyco_hydro_28 Pfam 74 382
IPR012334 Pectin_lyas_fold Gene3D 58 410
IPR006626 PbH1 SMART 223 244
IPR006626 PbH1 SMART 134 172
IPR006626 PbH1 SMART 370 392
IPR006626 PbH1 SMART 173 193
IPR006626 PbH1 SMART 305 326
IPR006626 PbH1 SMART 246 266
IPR006626 PbH1 SMART 276 297
IPR006626 PbH1 SMART 196 222
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 420 1.4e-88 68 391
No external refs found!