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  5. Zm00001d046389_T007

Zm00001d046389_T007


Description : Pectate lyase family protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046389_T007
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046389_T007
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_321
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_102


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 82 426
IPR002022 Pec_lyase Pfam 165 349
IPR002022 Pec_lyase SMART 157 356
IPR007524 Pec_lyase_N Pfam 30 51
IPR045032 PEL PANTHER 26 430
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 83 423
IPR018082 AmbAllergen PRINTS 311 330
IPR018082 AmbAllergen PRINTS 105 122
IPR018082 AmbAllergen PRINTS 129 154
IPR018082 AmbAllergen PRINTS 375 399
IPR018082 AmbAllergen PRINTS 165 181
IPR018082 AmbAllergen PRINTS 333 352
IPR018082 AmbAllergen PRINTS 404 427
IPR018082 AmbAllergen PRINTS 231 252
IPR018082 AmbAllergen PRINTS 311 330
IPR018082 AmbAllergen PRINTS 105 122
IPR018082 AmbAllergen PRINTS 129 154
IPR018082 AmbAllergen PRINTS 375 399
IPR018082 AmbAllergen PRINTS 165 181
IPR018082 AmbAllergen PRINTS 333 352
IPR018082 AmbAllergen PRINTS 404 427
IPR018082 AmbAllergen PRINTS 231 252
IPR002022 Pec_lyase Pfam 165 349
IPR007524 Pec_lyase_N Pfam 30 51
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 83 423
IPR045032 PEL PANTHER 8 433
IPR012334 Pectin_lyas_fold Gene3D 82 426
IPR002022 Pec_lyase SMART 157 356

No CAZYmes available for this sequence

No external refs found!