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  5. Zm00001d046487_T001

Zm00001d046487_T001


Description : poly(A)-binding protein 5


Gene families : OG_01_0007205 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007205_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046487_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046487_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_45


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 124 290
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 114 202
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 32 113
IPR002004 PABP_HYD Pfam 522 586
IPR002004 PABP_HYD SMART 526 589
IPR003954 RRM_dom_euk SMART 124 196
IPR003954 RRM_dom_euk SMART 210 282
IPR003954 RRM_dom_euk SMART 313 385
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 203 301
IPR000504 RRM_dom ProSiteProfiles 35 113
IPR000504 RRM_dom SMART 36 109
IPR000504 RRM_dom SMART 313 385
IPR000504 RRM_dom SMART 124 196
IPR000504 RRM_dom SMART 210 282
IPR000504 RRM_dom ProSiteProfiles 209 286
IPR000504 RRM_dom ProSiteProfiles 123 200
IPR000504 RRM_dom Pfam 37 106
IPR000504 RRM_dom Pfam 211 279
IPR000504 RRM_dom Pfam 314 382
IPR000504 RRM_dom Pfam 125 192
IPR035979 RBD_domain_sf SUPERFAMILY 305 396
IPR002004 PABP_HYD ProSiteProfiles 514 591
IPR045305 RRM2_I_PABPs CDD 121 196
IPR000504 RRM_dom ProSiteProfiles 312 389
IPR036053 PABP-dom SUPERFAMILY 457 590
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 302 401
IPR035979 RBD_domain_sf SUPERFAMILY 30 121
IPR006515 PABP_1234 NCBIfam 35 587
IPR000504 RRM_dom ProSiteProfiles 209 286
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 302 401
IPR002004 PABP_HYD SMART 526 589
IPR003954 RRM_dom_euk SMART 124 196
IPR003954 RRM_dom_euk SMART 210 282
IPR003954 RRM_dom_euk SMART 313 385
IPR035979 RBD_domain_sf SUPERFAMILY 124 290
IPR002004 PABP_HYD Pfam 522 586
IPR045305 RRM2_I_PABPs CDD 121 196
IPR036053 PABP-dom SUPERFAMILY 457 590
IPR000504 RRM_dom ProSiteProfiles 35 113
IPR000504 RRM_dom ProSiteProfiles 312 389
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 114 202
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 32 113
IPR035979 RBD_domain_sf SUPERFAMILY 305 396
IPR035979 RBD_domain_sf SUPERFAMILY 30 121
IPR006515 PABP_1234 TIGRFAM 35 587
IPR000504 RRM_dom SMART 36 109
IPR000504 RRM_dom SMART 313 385
IPR000504 RRM_dom SMART 124 196
IPR000504 RRM_dom SMART 210 282
IPR000504 RRM_dom Pfam 125 192
IPR000504 RRM_dom Pfam 211 279
IPR000504 RRM_dom Pfam 314 382
IPR000504 RRM_dom Pfam 37 106
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 203 301
IPR000504 RRM_dom ProSiteProfiles 123 200
IPR002004 PABP_HYD ProSiteProfiles 514 591

No CAZYmes available for this sequence

No external refs found!