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  5. Zm00001d046587_T003

Zm00001d046587_T003


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0003777 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003777_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046587_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046587_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_193


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006364 rRNA processing ISM GOs from InterProScan
CC GO:0032040 small-subunit processome ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt Pfam 266 296
IPR001680 WD40_rpt Pfam 222 254
IPR001680 WD40_rpt Pfam 309 342
IPR001680 WD40_rpt Pfam 173 209
IPR001680 WD40_rpt Pfam 559 596
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 13 314
IPR019775 WD40_repeat_CS ProSitePatterns 583 597
IPR001680 WD40_rpt ProSiteProfiles 481 522
IPR001680 WD40_rpt SMART 557 596
IPR001680 WD40_rpt SMART 257 297
IPR001680 WD40_rpt SMART 171 210
IPR001680 WD40_rpt SMART 516 554
IPR001680 WD40_rpt SMART 475 513
IPR001680 WD40_rpt SMART 83 120
IPR001680 WD40_rpt SMART 213 254
IPR001680 WD40_rpt SMART 304 343
IPR001680 WD40_rpt SMART 599 638
IPR001680 WD40_rpt SMART 127 168
IPR001680 WD40_rpt ProSiteProfiles 265 296
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 640
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 27 178
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 129 638
IPR001680 WD40_rpt ProSiteProfiles 564 605
IPR007319 SSU_processome_Utp21 Pfam 698 910
IPR024977 Apc4-like_WD40_dom Pfam 191 277
IPR001680 WD40_rpt Pfam 560 596
IPR001680 WD40_rpt ProSiteProfiles 564 605
IPR019775 WD40_repeat_CS ProSitePatterns 583 597
IPR001680 WD40_rpt SMART 557 596
IPR001680 WD40_rpt SMART 257 297
IPR001680 WD40_rpt SMART 171 210
IPR001680 WD40_rpt SMART 516 554
IPR001680 WD40_rpt SMART 475 513
IPR001680 WD40_rpt SMART 83 120
IPR001680 WD40_rpt SMART 213 254
IPR001680 WD40_rpt SMART 304 343
IPR001680 WD40_rpt SMART 599 638
IPR001680 WD40_rpt SMART 127 168
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 129 638
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 640
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 27 178
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 13 314
IPR001680 WD40_rpt ProSiteProfiles 265 296
IPR007319 SSU_processome_Utp21 Pfam 697 909
IPR001680 WD40_rpt ProSiteProfiles 481 522

No CAZYmes available for this sequence

No external refs found!