Zm00001d046672_T001

Description : MuDR family transposase

Gene families : OG_01_0012232 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012232_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046672_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046672_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_232

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018289	MULE_transposase_dom	Pfam	350	427
IPR006564	Znf_PMZ	SMART	600	627
IPR000270	PB1_dom	Pfam	25	93
IPR007527	Znf_SWIM	Pfam	594	623
IPR000270	PB1_dom	SMART	19	103
IPR007527	Znf_SWIM	ProSiteProfiles	593	625
IPR004332	Transposase_MuDR	Pfam	143	209
IPR007527	Znf_SWIM	Pfam	595	623
IPR006564	Znf_PMZ	SMART	600	627
IPR000270	PB1_dom	Pfam	25	92
IPR018289	MULE_transposase_dom	Pfam	351	426
IPR007527	Znf_SWIM	ProSiteProfiles	593	625
IPR004332	Transposase_MuDR	Pfam	143	209
IPR000270	PB1_dom	SMART	19	103

No CAZYmes available for this sequence

External Links

No external refs found!