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Description : KH domain-containing protein / zinc finger (CCCH type) family protein
Gene families : OG_01_0000640 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000640_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046740_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046740_T001 | No neighbors in network |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| MF | GO:0003729 | mRNA binding | ISM | GOs from InterProScan |
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR036612 | KH_dom_type_1_sf | SUPERFAMILY | 204 | 277 |
| IPR000571 | Znf_CCCH | SMART | 305 | 331 |
| IPR000571 | Znf_CCCH | SMART | 76 | 97 |
| IPR000571 | Znf_CCCH | SMART | 136 | 163 |
| IPR000571 | Znf_CCCH | Pfam | 306 | 331 |
| IPR000571 | Znf_CCCH | Pfam | 138 | 163 |
| IPR036855 | Znf_CCCH_sf | SUPERFAMILY | 304 | 336 |
| IPR036855 | Znf_CCCH_sf | SUPERFAMILY | 136 | 167 |
| IPR045877 | ZFP36-like | PANTHER | 271 | 336 |
| IPR004087 | KH_dom | SMART | 207 | 277 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 305 | 332 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 136 | 164 |
| IPR004088 | KH_dom_type_1 | Pfam | 210 | 273 |
| IPR036612 | KH_dom_type_1_sf | Gene3D | 204 | 302 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 136 | 164 |
| IPR036855 | Znf_CCCH_sf | SUPERFAMILY | 304 | 336 |
| IPR036612 | KH_dom_type_1_sf | Gene3D | 204 | 302 |
| IPR045877 | ZFP36-like | PANTHER | 2 | 338 |
| IPR000571 | Znf_CCCH | SMART | 305 | 331 |
| IPR000571 | Znf_CCCH | SMART | 76 | 97 |
| IPR000571 | Znf_CCCH | SMART | 136 | 163 |
| IPR000571 | Znf_CCCH | ProSiteProfiles | 305 | 332 |
| IPR004088 | KH_dom_type_1 | Pfam | 210 | 273 |
| IPR004087 | KH_dom | SMART | 207 | 277 |
| IPR000571 | Znf_CCCH | Pfam | 306 | 331 |
| IPR000571 | Znf_CCCH | Pfam | 138 | 163 |
| IPR036855 | Znf_CCCH_sf | SUPERFAMILY | 136 | 167 |
| IPR036612 | KH_dom_type_1_sf | SUPERFAMILY | 204 | 277 |
No CAZYmes available for this sequence
| No external refs found! |