Zm00001d046772_T001

Description : beta-D-xylosidase 4

Gene families : OG_01_0014347 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014347_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d046772_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d046772_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_122

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009044	xylan 1,4-beta-xylosidase activity	ISM	GOs from InterProScan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044347	cell wall polysaccharide catabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045493	xylan catabolic process	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097599	xylanase activity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:2000895	hemicellulose catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013783	Ig-like_fold	Gene3D	695	810
IPR036962	Glyco_hydro_3_N_sf	Gene3D	64	420
IPR026891	Fn3-like	Pfam	729	796
IPR001764	Glyco_hydro_3_N	Pfam	143	409
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	68	451
IPR026891	Fn3-like	SMART	729	801
IPR036881	Glyco_hydro_3_C_sf	SUPERFAMILY	452	664
IPR036881	Glyco_hydro_3_C_sf	Gene3D	437	662
IPR044993	BXL	PANTHER	44	799
IPR002772	Glyco_hydro_3_C	Pfam	452	661
IPR026891	Fn3-like	Pfam	729	797
IPR013783	Ig-like_fold	Gene3D	695	810
IPR044993	BXL	PANTHER	10	814
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	68	451
IPR036881	Glyco_hydro_3_C_sf	SUPERFAMILY	452	664
IPR001764	Glyco_hydro_3_N	Pfam	143	409
IPR026891	Fn3-like	SMART	729	801
IPR002772	Glyco_hydro_3_C	Pfam	452	661
IPR036881	Glyco_hydro_3_C_sf	Gene3D	437	662
IPR036962	Glyco_hydro_3_N_sf	Gene3D	64	420

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH3	216	815	1.7e-65	103	370

External Links

No external refs found!

Zm00001d046772_T001

Expression Profile

Co-expression Networks

Functional Annotation