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Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Gene families : OG_01_0003537 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003537_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047289_T003 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047289_T003 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_193 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | Pfam | 313 | 371 |
| IPR018222 | Nuclear_transport_factor_2_euk | ProSiteProfiles | 18 | 135 |
| IPR032710 | NTF2-like_dom_sf | SUPERFAMILY | 14 | 136 |
| IPR000504 | RRM_dom | SMART | 312 | 384 |
| IPR018222 | Nuclear_transport_factor_2_euk | CDD | 14 | 137 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 300 | 423 |
| IPR000504 | RRM_dom | ProSiteProfiles | 311 | 390 |
| IPR039539 | Ras_GTPase_bind_prot | PANTHER | 8 | 447 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 304 | 414 |
| IPR002075 | NTF2_dom | Pfam | 20 | 135 |
| IPR018222 | Nuclear_transport_factor_2_euk | CDD | 14 | 137 |
| IPR000504 | RRM_dom | ProSiteProfiles | 311 | 390 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 300 | 423 |
| IPR032710 | NTF2-like_dom_sf | SUPERFAMILY | 14 | 136 |
| IPR000504 | RRM_dom | SMART | 312 | 384 |
| IPR000504 | RRM_dom | Pfam | 313 | 371 |
| IPR018222 | Nuclear_transport_factor_2_euk | ProSiteProfiles | 18 | 135 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 304 | 414 |
| IPR002075 | NTF2_dom | Pfam | 20 | 135 |
| IPR039539 | Ras_GTPase_bind_prot | PANTHER | 1 | 472 |
No CAZYmes available for this sequence
| No external refs found! |