Zm00001d047462_T001

Description : Ribosomal protein L6 family

Gene families : OG_01_0010960 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010960_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047462_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047462_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_160

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019906	Ribosomal_uL6_bac-type	Hamap	118	294
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	Gene3D	201	298
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	Gene3D	117	200
IPR002358	Ribosomal_uL6_CS	ProSitePatterns	272	280
IPR019906	Ribosomal_uL6_bac-type	PRINTS	259	280
IPR019906	Ribosomal_uL6_bac-type	PRINTS	189	214
IPR019906	Ribosomal_uL6_bac-type	PRINTS	217	233
IPR020040	Ribosomal_uL6_a/b-dom	Pfam	208	282
IPR020040	Ribosomal_uL6_a/b-dom	Pfam	128	200
IPR000702	Ribosomal_uL6-like	PANTHER	119	293
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	SUPERFAMILY	119	200
IPR019906	Ribosomal_uL6_bac-type	NCBIfam	119	294
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	SUPERFAMILY	201	294
IPR019906	Ribosomal_uL6_bac-type	Hamap	118	294
IPR000702	Ribosomal_uL6-like	PANTHER	83	298
IPR020040	Ribosomal_uL6_a/b-dom	Pfam	208	282
IPR020040	Ribosomal_uL6_a/b-dom	Pfam	128	200
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	SUPERFAMILY	201	294
IPR019906	Ribosomal_uL6_bac-type	TIGRFAM	119	294
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	SUPERFAMILY	119	200
IPR019906	Ribosomal_uL6_bac-type	PRINTS	259	280
IPR019906	Ribosomal_uL6_bac-type	PRINTS	189	214
IPR019906	Ribosomal_uL6_bac-type	PRINTS	217	233
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	Gene3D	117	200
IPR002358	Ribosomal_uL6_CS	ProSitePatterns	272	280
IPR036789	Ribosomal_uL6-like_a/b-dom_sf	Gene3D	201	298

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d047462_T001

Expression Profile

Co-expression Networks

Functional Annotation