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  5. Zm00001d047481_T003

Zm00001d047481_T003


Description : NOP56-like pre RNA processing ribonucleoprotein


Gene families : OG_01_0001165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001165_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047481_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047481_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152


Type GO Term Name Evidence Source
MF GO:0030515 snoRNA binding ISM GOs from InterProScan
CC GO:0031428 box C/D RNP complex ISM GOs from InterProScan
CC GO:0032040 small-subunit processome ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR045056 Nop56/Nop58 PANTHER 1 558
IPR012976 NOSIC SMART 159 211
IPR042239 Nop_C Gene3D 286 398
IPR002687 Nop_dom Pfam 166 395
IPR012974 NOP58/56_N Pfam 2 65
IPR002687 Nop_dom ProSiteProfiles 281 399
IPR036070 Nop_dom_sf SUPERFAMILY 153 398
IPR042239 Nop_C Gene3D 286 398
IPR036070 Nop_dom_sf SUPERFAMILY 153 398
IPR045056 Nop56/Nop58 PANTHER 1 560
IPR012974 NOP58/56_N Pfam 2 65
IPR002687 Nop_dom Pfam 166 395
IPR012976 NOSIC SMART 159 211
IPR002687 Nop_dom ProSiteProfiles 281 399

No CAZYmes available for this sequence

No external refs found!