Zm00001d047502_T001

Description : DEAD-box protein abstrakt, putative

Gene families : OG_01_0012403 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012403_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047502_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047502_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003724	RNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014001	Helicase_ATP-bd	SMART	192	403
IPR014014	RNA_helicase_DEAD_Q_motif	ProSiteProfiles	173	201
IPR001878	Znf_CCHC	ProSiteProfiles	577	592
IPR014001	Helicase_ATP-bd	ProSiteProfiles	204	388
IPR001878	Znf_CCHC	SMART	576	592
IPR044113	DEADc_DDX41	CDD	184	389
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	197	376
IPR001650	Helicase_C	ProSiteProfiles	399	559
IPR027417	P-loop_NTPase	Gene3D	142	392
IPR001650	Helicase_C	SMART	438	519
IPR027417	P-loop_NTPase	Gene3D	398	560
IPR001650	Helicase_C	Pfam	415	519
IPR036875	Znf_CCHC_sf	SUPERFAMILY	576	597
IPR027417	P-loop_NTPase	SUPERFAMILY	249	534
IPR001878	Znf_CCHC	SMART	576	592
IPR001650	Helicase_C	ProSiteProfiles	399	559
IPR001650	Helicase_C	Pfam	412	519
IPR014014	RNA_helicase_DEAD_Q_motif	ProSiteProfiles	173	201
IPR014001	Helicase_ATP-bd	SMART	192	403
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	197	376
IPR027417	P-loop_NTPase	Gene3D	142	392
IPR001878	Znf_CCHC	ProSiteProfiles	577	592
IPR044113	DEADc_DDX41	CDD	184	389
IPR036875	Znf_CCHC_sf	SUPERFAMILY	576	597
IPR014001	Helicase_ATP-bd	ProSiteProfiles	204	388
IPR001650	Helicase_C	SMART	438	519
IPR027417	P-loop_NTPase	SUPERFAMILY	249	534
IPR027417	P-loop_NTPase	Gene3D	398	560

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d047502_T001

Expression Profile

Co-expression Networks

Functional Annotation