Zm00001d047506_T006

Description : RELA/SPOT homolog 1

Gene families : OG_01_0007476 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007476_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047506_T006
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047506_T006
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_143
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_224

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	ISM	GOs from InterProScan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007685	RelA_SpoT	SMART	496	578
IPR012676	TGS-like	SUPERFAMILY	630	702
IPR033655	TGS_RelA/SpoT	CDD	644	702
IPR004095	TGS	Pfam	643	702
IPR003607	HD/PDEase_dom	SMART	189	309
IPR043519	NT_sf	Gene3D	349	558
IPR007685	RelA_SpoT	CDD	497	566
IPR003607	HD/PDEase_dom	CDD	191	322
IPR045865	ACT-like_dom_sf	SUPERFAMILY	873	924
IPR006674	HD_domain	ProSiteProfiles	193	300
IPR004095	TGS	ProSiteProfiles	639	702
IPR043519	NT_sf	SUPERFAMILY	497	584
IPR007685	RelA_SpoT	Pfam	498	572
IPR012675	Beta-grasp_dom_sf	Gene3D	636	712
IPR007685	RelA_SpoT	CDD	497	566
IPR003607	HD/PDEase_dom	SMART	189	309
IPR006674	HD_domain	ProSiteProfiles	193	300
IPR007685	RelA_SpoT	Pfam	498	572
IPR012675	Beta-grasp_dom_sf	Gene3D	636	712
IPR043519	NT_sf	Gene3D	349	558
IPR045865	ACT-like_dom_sf	SUPERFAMILY	873	924
IPR003607	HD/PDEase_dom	CDD	191	322
IPR012676	TGS-like	SUPERFAMILY	630	702
IPR004095	TGS	Pfam	643	702
IPR007685	RelA_SpoT	SMART	496	578
IPR043519	NT_sf	SUPERFAMILY	497	584
IPR004095	TGS	ProSiteProfiles	639	702
IPR033655	TGS_RelA/SpoT	CDD	644	702

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d047506_T006

Expression Profile

Co-expression Networks

Functional Annotation