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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0007671 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007671_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047759_T003 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047759_T003 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_176 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_265 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 523 | 557 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 386 | 420 |
| IPR033443 | PPR_long | Pfam | 216 | 341 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 312 | 342 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 351 | 385 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 487 | 535 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 374 | 434 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 547 | 603 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 315 | 342 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 353 | 386 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 424 | 456 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 388 | 421 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 561 | 593 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 480 | 672 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 298 | 467 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 421 | 455 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 558 | 592 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 143 | 293 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 487 | 535 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 547 | 603 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 374 | 434 |
| IPR033443 | PPR_long | Pfam | 216 | 342 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 143 | 293 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 353 | 386 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 315 | 342 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 388 | 421 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 424 | 456 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 561 | 593 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 558 | 592 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 480 | 672 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 298 | 467 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 386 | 420 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 523 | 557 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 421 | 455 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 312 | 342 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 351 | 385 |
No CAZYmes available for this sequence
| No external refs found! |