Zm00001d047882_T002

Description : HCP-like superfamily protein

Gene families : OG_01_0006074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006074_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047882_T002	No neighbors in network
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047882_T002
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_189

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030433	ubiquitin-dependent ERAD pathway	ISM	GOs from InterProScan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0036503	ERAD pathway	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	335	450
IPR044623	HRD3	PANTHER	16	674
IPR006597	Sel1-like	Pfam	337	369
IPR006597	Sel1-like	Pfam	146	179
IPR006597	Sel1-like	Pfam	301	334
IPR006597	Sel1-like	Pfam	526	548
IPR006597	Sel1-like	Pfam	265	297
IPR006597	Sel1-like	Pfam	374	402
IPR006597	Sel1-like	Pfam	457	475
IPR006597	Sel1-like	Pfam	408	442
IPR006597	Sel1-like	Pfam	560	591
IPR011990	TPR-like_helical_dom_sf	Gene3D	105	218
IPR006597	Sel1-like	SMART	560	595
IPR006597	Sel1-like	SMART	144	179
IPR006597	Sel1-like	SMART	262	298
IPR006597	Sel1-like	SMART	299	334
IPR006597	Sel1-like	SMART	335	371
IPR006597	Sel1-like	SMART	372	407
IPR006597	Sel1-like	SMART	408	443
IPR006597	Sel1-like	SMART	524	559
IPR011990	TPR-like_helical_dom_sf	Gene3D	227	334
IPR011990	TPR-like_helical_dom_sf	Gene3D	451	613
IPR011990	TPR-like_helical_dom_sf	Gene3D	335	450
IPR006597	Sel1-like	Pfam	301	334
IPR006597	Sel1-like	Pfam	408	442
IPR006597	Sel1-like	Pfam	526	548
IPR006597	Sel1-like	Pfam	336	369
IPR006597	Sel1-like	Pfam	560	590
IPR006597	Sel1-like	Pfam	457	475
IPR006597	Sel1-like	Pfam	265	297
IPR006597	Sel1-like	Pfam	146	179
IPR006597	Sel1-like	Pfam	375	398
IPR011990	TPR-like_helical_dom_sf	Gene3D	227	334
IPR011990	TPR-like_helical_dom_sf	Gene3D	451	613
IPR011990	TPR-like_helical_dom_sf	Gene3D	105	218
IPR006597	Sel1-like	SMART	560	595
IPR006597	Sel1-like	SMART	144	179
IPR006597	Sel1-like	SMART	262	298
IPR006597	Sel1-like	SMART	299	334
IPR006597	Sel1-like	SMART	335	371
IPR006597	Sel1-like	SMART	372	407
IPR006597	Sel1-like	SMART	408	443
IPR006597	Sel1-like	SMART	524	559
IPR044623	HRD3	PANTHER	15	674

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d047882_T002

Expression Profile

Co-expression Networks

Functional Annotation