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  5. Zm00001d047897_T013

Zm00001d047897_T013


Description : TOPLESS-related 1


Gene families : OG_01_0000290 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000290_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d047897_T013
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d047897_T013
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006355 regulation of DNA-templated transcription ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 807 1054
IPR001680 WD40_rpt SMART 534 577
IPR001680 WD40_rpt SMART 396 440
IPR001680 WD40_rpt SMART 490 531
IPR001680 WD40_rpt SMART 580 620
IPR001680 WD40_rpt SMART 867 907
IPR001680 WD40_rpt SMART 822 864
IPR001680 WD40_rpt SMART 340 379
IPR001680 WD40_rpt SMART 446 487
IPR001680 WD40_rpt SMART 910 949
IPR001680 WD40_rpt SMART 1000 1041
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 511 691
IPR006594 LisH ProSiteProfiles 4 36
IPR048419 Topless_Znf Pfam 164 204
IPR006595 CTLH_C ProSiteProfiles 34 92
IPR006594 LisH SMART 4 36
IPR019775 WD40_repeat_CS ProSitePatterns 474 488
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 321 510
IPR001680 WD40_rpt ProSiteProfiles 453 496
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 823 1093
IPR006595 CTLH_C SMART 34 92
IPR027728 Topless_fam PANTHER 1 1110
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 350 662
IPR001680 WD40_rpt Pfam 453 486
IPR001680 WD40_rpt Pfam 915 949
IPR001680 WD40_rpt Pfam 494 530
IPR001680 WD40_rpt ProSiteProfiles 917 949
IPR019775 WD40_repeat_CS ProSitePatterns 474 488
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 511 691
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 807 1054
IPR001680 WD40_rpt ProSiteProfiles 917 949
IPR027728 Topless_fam PANTHER 1 1131
IPR001680 WD40_rpt Pfam 453 486
IPR001680 WD40_rpt Pfam 916 949
IPR001680 WD40_rpt ProSiteProfiles 453 496
IPR006594 LisH SMART 4 36
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 321 510
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 350 662
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 823 1093
IPR006595 CTLH_C ProSiteProfiles 34 92
IPR001680 WD40_rpt SMART 534 577
IPR001680 WD40_rpt SMART 396 440
IPR001680 WD40_rpt SMART 580 620
IPR001680 WD40_rpt SMART 490 531
IPR001680 WD40_rpt SMART 867 907
IPR001680 WD40_rpt SMART 822 864
IPR001680 WD40_rpt SMART 340 379
IPR001680 WD40_rpt SMART 446 487
IPR001680 WD40_rpt SMART 910 949
IPR001680 WD40_rpt SMART 1000 1041
IPR006595 CTLH_C SMART 34 92
IPR006594 LisH ProSiteProfiles 4 36

No CAZYmes available for this sequence

No external refs found!