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  5. Zm00001d048065_T002

Zm00001d048065_T002


Description : tubulin alpha-5


Gene families : OG_01_0000030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000030_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048065_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048065_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_13
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_272


Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005200 structural constituent of cytoskeleton ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
CC GO:0005874 microtubule ISM GOs from InterProScan
BP GO:0007017 microtubule-based process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom SMART 248 393
IPR037103 Tubulin/FtsZ-like_C Gene3D 269 383
IPR003008 Tubulin_FtsZ_GTPase Pfam 3 214
IPR036525 Tubulin/FtsZ_GTPase_sf SUPERFAMILY 1 244
IPR003008 Tubulin_FtsZ_GTPase SMART 49 246
IPR013838 Beta-tubulin_BS ProSitePatterns 1 4
IPR008280 Tub_FtsZ_C SUPERFAMILY 246 436
IPR000217 Tubulin PANTHER 1 439
IPR036525 Tubulin/FtsZ_GTPase_sf Gene3D 1 268
IPR000217 Tubulin PRINTS 153 174
IPR000217 Tubulin PRINTS 10 30
IPR000217 Tubulin PRINTS 95 106
IPR000217 Tubulin PRINTS 108 132
IPR000217 Tubulin PRINTS 134 152
IPR000217 Tubulin PRINTS 192 212
IPR000217 Tubulin PRINTS 53 72
IPR000217 Tubulin PRINTS 178 191
IPR000217 Tubulin PRINTS 380 408
IPR002452 Alpha_tubulin PRINTS 45 58
IPR002452 Alpha_tubulin PRINTS 88 101
IPR002452 Alpha_tubulin PRINTS 422 438
IPR002452 Alpha_tubulin PRINTS 18 33
IPR002452 Alpha_tubulin PRINTS 148 160
IPR002452 Alpha_tubulin PRINTS 321 342
IPR002452 Alpha_tubulin PRINTS 347 360
IPR002452 Alpha_tubulin PRINTS 161 172
IPR002452 Alpha_tubulin PRINTS 360 379
IPR002452 Alpha_tubulin PRINTS 385 401
IPR002452 Alpha_tubulin PRINTS 120 128
IPR002452 Alpha_tubulin PRINTS 214 226
IPR002452 Alpha_tubulin PRINTS 274 289
IPR017975 Tubulin_CS ProSitePatterns 142 148
IPR023123 Tubulin_C Gene3D 384 436
IPR018316 Tubulin/FtsZ_2-layer-sand-dom Pfam 263 392
IPR017975 Tubulin_CS ProSitePatterns 142 148
IPR018316 Tubulin/FtsZ_2-layer-sand-dom Pfam 263 392
IPR000217 Tubulin PRINTS 153 174
IPR000217 Tubulin PRINTS 10 30
IPR000217 Tubulin PRINTS 95 106
IPR000217 Tubulin PRINTS 108 132
IPR000217 Tubulin PRINTS 134 152
IPR000217 Tubulin PRINTS 192 212
IPR000217 Tubulin PRINTS 53 72
IPR000217 Tubulin PRINTS 178 191
IPR000217 Tubulin PRINTS 380 408
IPR003008 Tubulin_FtsZ_GTPase SMART 49 246
IPR018316 Tubulin/FtsZ_2-layer-sand-dom SMART 248 393
IPR023123 Tubulin_C Gene3D 384 436
IPR013838 Beta-tubulin_BS ProSitePatterns 1 4
IPR008280 Tub_FtsZ_C SUPERFAMILY 246 436
IPR003008 Tubulin_FtsZ_GTPase Pfam 3 214
IPR002452 Alpha_tubulin PRINTS 45 58
IPR002452 Alpha_tubulin PRINTS 88 101
IPR002452 Alpha_tubulin PRINTS 422 438
IPR002452 Alpha_tubulin PRINTS 18 33
IPR002452 Alpha_tubulin PRINTS 148 160
IPR002452 Alpha_tubulin PRINTS 321 342
IPR002452 Alpha_tubulin PRINTS 347 360
IPR002452 Alpha_tubulin PRINTS 161 172
IPR002452 Alpha_tubulin PRINTS 360 379
IPR002452 Alpha_tubulin PRINTS 385 401
IPR002452 Alpha_tubulin PRINTS 120 128
IPR002452 Alpha_tubulin PRINTS 214 226
IPR002452 Alpha_tubulin PRINTS 274 289
IPR036525 Tubulin/FtsZ_GTPase_sf SUPERFAMILY 1 244
IPR036525 Tubulin/FtsZ_GTPase_sf Gene3D 1 268
IPR037103 Tubulin/FtsZ-like_C Gene3D 269 383
IPR000217 Tubulin PANTHER 1 445

No CAZYmes available for this sequence

No external refs found!