Zm00001d048086_T001

Description : RPA70-kDa subunit B

Gene families : OG_01_0011033 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011033_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048086_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048086_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR047192	Euk_RPA1_DBD_C	CDD	451	619
IPR007199	Rep_factor-A_N	Pfam	7	107
IPR012340	NA-bd_OB-fold	Gene3D	176	285
IPR012340	NA-bd_OB-fold	SUPERFAMILY	5	110
IPR012340	NA-bd_OB-fold	Gene3D	431	620
IPR031657	REPA_OB_2	Pfam	312	405
IPR004591	Rfa1	NCBIfam	5	619
IPR012340	NA-bd_OB-fold	SUPERFAMILY	295	424
IPR012340	NA-bd_OB-fold	Gene3D	291	430
IPR004365	NA-bd_OB_tRNA	Pfam	193	276
IPR013955	Rep_factor-A_C	Pfam	468	613
IPR012340	NA-bd_OB-fold	Gene3D	6	120
IPR012340	NA-bd_OB-fold	SUPERFAMILY	180	288
IPR012340	NA-bd_OB-fold	SUPERFAMILY	447	620
IPR004591	Rfa1	PANTHER	180	598
IPR007199	Rep_factor-A_N	Pfam	7	107
IPR013955	Rep_factor-A_C	Pfam	468	613
IPR031657	REPA_OB_2	Pfam	312	405
IPR004591	Rfa1	TIGRFAM	5	619
IPR012340	NA-bd_OB-fold	SUPERFAMILY	295	424
IPR004591	Rfa1	PANTHER	7	618
IPR012340	NA-bd_OB-fold	SUPERFAMILY	5	110
IPR004365	NA-bd_OB_tRNA	Pfam	192	278
IPR012340	NA-bd_OB-fold	SUPERFAMILY	447	620
IPR012340	NA-bd_OB-fold	SUPERFAMILY	180	288
IPR013955	Rep_factor-A_C	CDD	451	619

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d048086_T001

Expression Profile

Co-expression Networks

Functional Annotation