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  5. Zm00001d048243_T001

Zm00001d048243_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015272 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015272_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048243_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048243_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_216
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_132


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 330 365
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 294
IPR011990 TPR-like_helical_dom_sf Gene3D 246 345
IPR011990 TPR-like_helical_dom_sf Gene3D 346 468
IPR011990 TPR-like_helical_dom_sf Gene3D 166 245
IPR011990 TPR-like_helical_dom_sf Gene3D 20 163
IPR002885 Pentatricopeptide_rpt NCBIfam 199 232
IPR002885 Pentatricopeptide_rpt NCBIfam 98 119
IPR002885 Pentatricopeptide_rpt NCBIfam 297 331
IPR002885 Pentatricopeptide_rpt NCBIfam 267 297
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 197 231
IPR045215 PPR_prot_At1g15510 PANTHER 245 475
IPR002885 Pentatricopeptide_rpt Pfam 69 89
IPR002885 Pentatricopeptide_rpt Pfam 373 394
IPR002885 Pentatricopeptide_rpt Pfam 98 119
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 295 329
IPR046848 E_motif Pfam 412 474
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 262 454
IPR002885 Pentatricopeptide_rpt Pfam 197 242
IPR002885 Pentatricopeptide_rpt Pfam 294 343
IPR002885 Pentatricopeptide_rpt Pfam 197 243
IPR002885 Pentatricopeptide_rpt Pfam 294 343
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 262 454
IPR002885 Pentatricopeptide_rpt TIGRFAM 297 331
IPR002885 Pentatricopeptide_rpt TIGRFAM 332 366
IPR002885 Pentatricopeptide_rpt TIGRFAM 199 232
IPR002885 Pentatricopeptide_rpt TIGRFAM 267 297
IPR002885 Pentatricopeptide_rpt TIGRFAM 98 119
IPR011990 TPR-like_helical_dom_sf Gene3D 20 163
IPR011990 TPR-like_helical_dom_sf Gene3D 246 345
IPR011990 TPR-like_helical_dom_sf Gene3D 346 468
IPR011990 TPR-like_helical_dom_sf Gene3D 166 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 295 329
IPR045215 PPR_prot_At1g15510 PANTHER 92 475
IPR002885 Pentatricopeptide_rpt Pfam 98 119
IPR002885 Pentatricopeptide_rpt Pfam 373 394
IPR002885 Pentatricopeptide_rpt Pfam 69 89
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 330 365
IPR045215 PPR_prot_At1g15510 PANTHER 14 91
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 264 294
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 197 231

No CAZYmes available for this sequence

No external refs found!